Martin K. Scherer

Question: multiline regex allowed in --replace-text?

16

background is I want to strip output of an IPython notebook, which uses json to store its data. So I would need to match the last bracket of an "outputs"...

Invoking parent classes constructors inconsistency because of super() usage

2

If a class in a hierarchy misses a call to super, eg. the most basic interface does not call super on object (which is pretty common in our code base),...

Implement Laio density based clustering algorithm

5

This would be nice to have for estimating core MSMs. One can find an impl for R here: https://github.com/thomasp85/densityClust @giopina Frank told me, that you are working on this or...

provide convenience function to plot TICA.timescales (eg. like for ITS)

3

maybe we can simply change the plot_timescales function to accept a list of TICA or a list of timescale arrays.

Changing a tag schema resource after Validators creation

6

Upon the first call of AsdfFile.validate(), one cannot change the schema used to validate a specific tag. Even though the provided config context defining the resource mapping during the validate...

Using jsonpickle 0.9.5 I'm pickling some nested class hierarchy with make_refs=(True, False), for both cases the resulting json string contains ref/id tags, which should not be the case right? I...

Locally defined classes got restored as dict

4

Eg the following raises the ValueError in the load method: ``` python import jsonpickle import unittest import numpy as np def load(file_like): import bz2 try: if is_string(file_like): file_like = bz2.open(file_like)...

Modernize to c++14 for gcc/clang like compilers

11

So far, we have used c++14 standard only for the Windows platform, but Unix still used c++11. This PR modernizes some constructs already introduced in c++11, but really not used...

some jedi version causing trouble

3

> A version of Jedi is having issues. It is possible that a bad behavior in JPype is triggering it, but it will take time to resolve which I am...

- `jpype/_jvmfinder.py:325: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.` - `jpype/_jvmfinder.py:326: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.`