Maria Gjerstad Maseng

From phyloseq-object to microbiomemarker-class-object

1

Hi! I have a phyloseq-object, containing sample data, OTU-data and taxa-info. How do I turn it into a microbiomemarker-class object? Thanks for making this nice package!

Hi! I would like to "plot_spaghetti", but I am getting results assume to be wrong as they are the same for all subjects. Do you have any idea about why...

Hi! I want to `plot_paired_abundances`, and are successfully able. However, i would like to change the levels of the group (currently they are post-pre, want it to be pre-post). When...

generate_alpha_trend_test_long error(): error in vec_data() : ! x must be a vector, not a <sample_data> object.

3

Hi, thanks for a great package. I am not able to generate: generate_alpha_trend_test_long - see photo. generate_alpha_trend_test_long - error saying: error in vec_data() : ! x must be a vector,...