meryl

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How to get kmer count in query fastq files with kmer database

2

Hi, I generated a kmer database with `meryl count` command, and I want to count the kmers of the database in different query fastq files, how to do it with...

leon945945

Run Meryl on multiple fastq files

2

I have a large list of fastq files that will be used for the same database. Is there a simple way to run the command on a list of files...

NicMAlexandre

API docs

1

Are there any draft docs available for the Meryl C++ API? Or, very optimistically, has anyone written any python bindings for doing kmer set operations with Meryl?

Adamtaranto

Use sequence to query meryl db

1

I want to generate a db of all kmers and their counts for a reference genome using `meryl count`, then for thousands of small (~1-5 kbp) sequences I want to...

Adamtaranto

How to install meryl2？

1

@treangen Dear author, thank you very much for writing this software, this software is very convenient. Therefore, I would like to experience meryl2 in advance. How to install it?

socialhang

How to get haplotype-specific reads?

4

Hi, Thanks for developing this awesome tools. I'd like to get haplotype-specific HiFi reads via haplotype-specific kmers. I run script to get haplotype-specific kmers, meryl version is 1.3: `meryl count...

DayTimeMouse