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How to get kmer count in query fastq files with kmer database
Hi, I generated a kmer database with meryl count
command, and I want to count the kmers of the database in different query fastq files, how to do it with meryl
.
I saw that meryl-lookup
did the similar job, but the output file of meryl-lookup
is not what I want, I want to compare the number of each kmer in different queries, my expected output is like this:
input1 input2 kmer1 count count kmer2 count count .......
Hope for your reply.