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How to get kmer count in query fastq files with kmer database

Open leon945945 opened this issue 6 months ago • 2 comments

Hi, I generated a kmer database with meryl count command, and I want to count the kmers of the database in different query fastq files, how to do it with meryl. I saw that meryl-lookup did the similar job, but the output file of meryl-lookup is not what I want, I want to compare the number of each kmer in different queries, my expected output is like this:

input1 input2 kmer1 count count kmer2 count count .......

Hope for your reply.

leon945945 avatar Aug 02 '24 02:08 leon945945