sssom
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mapping-commons
Simple Standard for Sharing Ontology Mappings
There are many cases where equivalence/exact is not appropriate but we want to be more precise that close etc E..g * uniprot gene-centric reference protein to a gene (cc @sierra-moxon)...
Dear all, During the BioHackathon 2015, we proposed metadata for both ontologies and mappings within ontologies, see section **Ontology metadata mapping.** in [1]. I've looked through the SSSOM scheme and...
**Element id (e.g. creator_id, mapping_tool_version):** (Must be lower case and contain only letters and underscores.) ``` mapping_state ``` **Value data type (e.g. URI, URL, text, xsd:boolean):** ``` ENUM: active, obsolete,...
Curation rules can be complex, but lets start with the more simple ones we can already represent: _Domain expert decision_ is the default: | subject_id | relation_id | object_id |...
I frequently want to be able to state: I have looked in `object_source` for a matching or close concept to `subject_id` but am confident there is nothing. How should I...
Do we have terms to handle when multiple fields map to a single field. For example, it is common to see dates broken out into year, month, day field; e.g.:...
Note: all comments in the following apply to both `subject` and `object` fields. The normal mapping case is when one term in a source set (subject) is mapped to exactly...
## Mapping Chains Transitivity of equivalence - skos:exactMatch skos:exactMatch -> skos:exactMatch Broad - skos:exactMatch skos:broadMatch -> skos:broadMatch - skos:broadMatch skos:exactMatch -> skos:broadMatch Narrower - skos:exactMatch skos:narrowMatch -> skos:narrowMatch - skos:narrowMatch...
In the only examples there is a single creator can a list be provided using yaml list syntax? the linkml doesn't declare this as multivalued.
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Simple Standard for Sharing Ontology Mappings