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How to accurately capture curation rules?

Open matentzn opened this issue 3 years ago • 2 comments

Curation rules can be complex, but lets start with the more simple ones we can already represent:

Domain expert decision is the default:

subject_id relation_id object_id match_type object_source
HP:001 owl:equivalentTo MP:001 sssom:HumanCuration mp.owl

The curation rule here is: a domain expert determined or confirmed the equivalence mapping by hand.

Automated tool:

subject_id relation_id object_id match_type object_source mapping_tool subject_match_field object_match_field
HP:001 owl:equivalentTo MP:001 sssom:LexicalMatch mp.owl logmap skos:exactSynonym rdfs:label

The curation rule is: a tool (logmap) determined the equivalence mapping by matching an exact synonym of the subject to a label of the object. (this could be further refined by adding preprocessing information, such as "stemming" to these fields).

@mellybelly and others, please add more concrete curation rules you encounter regularly when creating a mapping.

matentzn avatar May 31 '21 17:05 matentzn

Just saw we already started a discussion here: https://github.com/mapping-commons/SSSOM/issues/31

matentzn avatar May 31 '21 19:05 matentzn

Seems closely related to #3.

cmungall avatar Sep 03 '21 17:09 cmungall