sssom

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explicit docs template dir

2

Partial solution for [#227, #226] - [x] new doc generation rule in `project.Makefile` that uses an explicit `--template-directory` - [x] `doc_templates/slot.md.jinja2` edited so that slot example values are displayed

turbomam

Mapping involving post-coordinated subjects or objects

35

Thank you for the SSSOM initiative! I think I know the answer, but I would like to get your opinion on this topic: Is there a way to express in...

tudorache

I'll do this

turbomam

Consider interoperation/ingest with Ontologymaps

14

Especially this entry that we really need focusing on ICDO: https://progenetix.org/service-collection/ontologymaps/ @mbaudis

mellybelly

Examples of `object_preprocessing` and `subject_preprocessing`

1

It would be useful to provide examples of what should go in these fields as it's not clear from reading the spec and none of the SSSOM files I looked...

ialarmedalien

[New metadata element]: `MappingSet.curie_map`

12

**Element id (e.g. creator_id, mapping_tool_version):** `curie_map` ``` curie_map: OMIM: http://www.omim.org/something/something ``` **Value data type (e.g. URI, URL, text, xsd:boolean):** ``` map ``` **Description** A map of CURIEs. CURIE maps already...

joeflack4

Add mapping_set_title

1

Resolves #219 - [ ] `docs/` have been added/updated if necessary - [ ] `make test` has been run locally - [ ] tests have been added/updated (if applicable) -...

matentzn

Create better analysis of related work

22

This issue is to just dump some vaguely related work in; - [ ] http://grasstunes.net/ontology/similarity/0.2/musim.html - [ ] http://alignapi.gforge.inria.fr/format.html - [ ] http://alignapi.gforge.inria.fr/edoal.html - [ ] https://www.fda.gov/drugs/coronavirus-covid-19-drugs/covid-19-real-world-data-rwd-data-elements-harmonization-project - [ ]...

matentzn

[New metadata element]: MappingSet.intention

1

### Element id Class: `MappingSet` Field / Element id: `intention` ### Examples > This value set is intended for use in a clinical data entry setting. > This value set...

joeflack4

Several questions: Mapping non-standardized data models

26

## Overview @matentzn We went over some of this this morning, regarding [SSSOM::FHIR_ConceptMap](https://docs.google.com/spreadsheets/d/1J19foBAYO8PCHwOfksaIGjNu-q5ILUKFh2HpOCgYle0/edit#gid=913661924) and the LinkML_Enum::FHIR_ValueSet work I'm doing. @stephanieshong is doing her own mapping work, e.g. between PCORnet and...

joeflack4