manzouri

including non-brain func data in registration

2

### What happened? I run fmriprep on the subjects with 5 sessions and having 4 tasks per session. In the report of Alignment of func and anat MRI , there...

PEPOLAR field map can't be recognised after upgrading to version 22.0.0

20

### What happened? I could use my PEPOLAR filed maps with earlier version but v 22 can't recognise them any Moreland ignore field maps ### What command did you use?...

RuntimeWarning: Divide by zero

2

Hi , I run the denoiser and get the output file but not the html report due to the following error: Computing dvars... /home/amir/.local/lib/python3.8/site-packages/numpy/lib/shape_base.py:379: VisibleDeprecationWarning: Creating an ndarray from ragged...

Problem running denoise

3

Hi, I am trying to run denoise on my data but getting the following error: Command: 'python run_denoise.py /home/data/OUT/derivatives/fmriprep/sub-101/ses-01/func/sub-101_ses-01_task-touch_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz /home/data/OUT/derivatives/fmriprep/sub-101/ses-01/func/sub-101_ses-01_task-touch_run-1_desc-confounds_timeseries.tsv /home/data/OUT/derivatives/fmriprep/sub-101/ses-01/func/ --col_names csf white_matter framewise_displacement --hp_filter 0.01' Output: /home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/glm/__init__.py:56: FutureWarning:...

### What happened? I ran fmriprep 23.2.0 on my data where I have 2 functional (RS and task) , in some subjects I see a poor brain mask that misses...