David Manthey

I'm getting this when there is a heap error: ``` File "site-packages/bioformats/formatreader.py", line 674, in __init__ self.init_reader() File "site-packages/bioformats/formatreader.py", line 735, in init_reader logger.warn(e.message) AttributeError: 'JavaException' object has no attribute...

For any CLI that takes a long time to run, we could send progress messages. See https://github.com/DigitalSlideArchive/superpixel-classification/blob/main/superpixel_classification/SuperpixelClassification/progress_helper.py. Perhaps that file could be added in the `histomicstk/cli` directory and used by...

We've had a request to time out user sessions if there has been no activity in 15 minutes. Currently, when a user logs in, we create a token that has...

With the release of Python 3.12, the smtpd and asyncore modules are no longer present. This breaks the SMTP mocks used in pytest_girder. These need to be refactored to work...

Move attached files between assetstores

3

We have a function to move files between assetstores. This doesn't support moving attached files, only files that are actually owned directly by an item. Probably the correct behavior is...

Currently, the provisioning script will install a fixed set of samples if requested. It would be nice if this could be specified more explicitly. Something like: ``` initial-data: - source-host:...

There are stored in the `datasets` `coordinateTransformations` `scale` metadata.