MANSI UPADHYAY

Smoove not working !!!!!! Failed to read from standard input: unknown file type panic: write |1: broken pipe

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@brentp Smoove is not working even after my bam size is quite good. Command used: smoove call --outdir test_mansi/SRR6745447_output/smoove_output/ --name SRR6745447 --fasta part_II/references/hg38.fa -p 1 --genotype part_II/output/fq2bam_no_indels/SRR6745447_sorted.bam The size of...

Hi thanks for the great tool. I have some query, I want to remove some poor quality snps from the vcf file. The filteration I want should be based the...