mainharryHR

How to customise the X-axis order in heat_freq and color in chord_freq

6

Dear Liana team and users, Thanks for great package for being easy to use. After subsetting the data based on the conditions, I want to plot the heatmap with desired...

How to plot the 0 value during different comparisons?

11

### Description of feature Dear team, Thanks for the great package I believe I have already generate all the comparisons. But when I try to plot, I only can see...

Multiple comparisons

2

Dear Sir or Madam, Thanks for the great packages. The multiple comparison have been discussed several times, But I am still not sure how to incorporate for my study. It...

Errors to install the monocle3 in Macbook

1

Dear everyone, It seems many people have the issues to install the package for Mac. Is there any easy or straightforward way to resolve this problems? `devtools::install_github('cole-trapnell-lab/monocle3')` Using github PAT...

Multiple comparison, such as 3 or 4 conditions

6

Dear everyone, I have 3 comparisons in my dataset. It seems the Liana 0.1.12 only support 2 comparisons for now. Should I subset the 2 conditions each time from Seurat...

liana_tensor_c2c Errors

1

Dear everyone, Thanks for great package. I am following the tutorial https://saezlab.github.io/liana/articles/liana_cc2tensor.html, But I encountered errors. My gut feeling is that this error might be related to the names between...

What is the reasonable FDR value? 0.05?

1

Dear Team. Thank you for the great package. I am curious what is the reasonable FDR value? In the tutorial, one used the FDR = 0.4. In order to publish...

Dear Sir or Madam, Thanks for the great packages. I am working with around 6K cells, with 30 annotations. However, I am stuck at liana wrap for several days. Even...