quickmerge

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Program runs, but doesn't provide correct output

2

Hi, I am trying to use this tool merge a hifiasm and a canu assembly, but I am running into some issues. The jobs seem to complete, but they are...

drew-olson-tmru

Aborted (core dumped) quickmerge

5

1 -d 2 2020merge/out.rq.delta 3 -q 4 2020.fa 5 -r 6 pilon_polished.fasta 7 -hco 8 5.0 9 -c 10 1.5 11 -l 12 0 13 -ml 14 5000 15 -p...

chenzhaozhu

terminate called after throwing an instance of std invalid argument

7

trying to merge to fasta files and I keep getting this error!

mastermindchr

core dump at final step

3

I'm encountering an error using Quickmerge installed from Bioconda in September of this year, in the stderr output: ``` # COMPLETETIME # SPACE 4: FINISHING DATA Abort (core dumped) ```...

rwhetten

[Mac] Running merge_wrapper.py in conda : No such file or directory: 'nucmer': 'nucmer'

3

Hi Mahul ! I have encountered some issues trying to run quickmerge within my conda environement. I have installed quickmerge using the following : `conda install -c conda-forge -c bioconda...

RxLoutre

Quickmerge fails to set its PATH internally

6

Hi, I am developing a Galaxy tool for Quickmerge and it looks like your tool is doing some internal PATH management that causes an edge-case bug. When I `conda install...

neoformit

sometimes quick merge does not merge contigs?

3

Dear developers, thanks a lot for writing this nice tool! I used the quickmerge frequently to merge my assemblies from PacBio and Nanopore. Most of the time I see a...

zmz1988

terminate called after throwing an instance of 'std::out_of_range' what(): basic_string::substr: __pos (which is 1047464) > this->size() (which is 0) Aborted

6

Hi, When I try to run quickmerge using assembly A as reference (Illumina assembly ~746MB) and assembly B (nanopore assembly ~846MB) as query, it works fine. However, when I switch...

nrayamaj

quickmerge aborted

8

Hi, I am getting this error while running quickmerge quickmerge -d out.rq.delta -q IPA.fasta -r hifi-hybrid.fasta -hco 5.0 -c 1.5 -l n -ml m -p prefix 0 quickmerge 1 -d...

khush876

Output problems

2

Hi, I was using quickmerge on assemblies from Flye and Shasta. The run finished without any problems and I have an issue with the output files I received. The run...

Mondlii