terminate called after throwing an instance of std invalid argument

[mastermindchr]

trying to merge to fasta files and I keep getting this error!

[mahulchak]

Could you please post your command ?

On Thu, Oct 11, 2018, 03:39 mastermindchr [email protected] wrote:

trying to merge to fasta files and I keep getting this error!

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[mastermindchr]

quickmerge -d delta_file.out -q /home/etc/contigs.fasta -r home/etc/contigs2.fasta -hco 5.0 -c 1.5 -l n -ml m -p qm

[esolares]

Hi

Thank you for your email. I noticed in your command line that the reference was missing a forward slash. Could you try adding the missing forward slash and let us know if this resolved this issue or not.

I.e. -r /home/

Thank you,

Edwin Solares

On Thu, Oct 11, 2018, 4:21 AM mastermindchr [email protected] wrote:

quickmerge -d delta_file.out -q /home/etc/contigs.fasta -r home/etc/contigs2.fasta -hco 5.0 -c 1.5 -l n -ml m -p qm

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[esolares]

Hi,

I also just noticed that you are passing -ml a value of m. Could you please also check this? This should be an integer value.

Please let us know if this resolves your issue or if you are getting other or the same error.

Thank you,

Edwin

On Thu, Oct 11, 2018, 4:21 AM mastermindchr [email protected] wrote:

quickmerge -d delta_file.out -q /home/etc/contigs.fasta -r home/etc/contigs2.fasta -hco 5.0 -c 1.5 -l n -ml m -p qm

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[mycovirus]

Hi I also had a same problem this is my command: /biosoft/quickmerge/merger/quickmerge -d out.rq.delta -q /data3/haidu/origin/genome/huada/scaffolds.fasta -r /data3/haidu/origin/genome/huada/nuohe.fasta -hco 5.0 -c 1.5 -ln -ml 5000 &

and it turned:terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_M_construct null not valid

if you have solved the problem ,can you give me some advice?

Thank you, haidu

[sqwwww]

Hi I also had a same problem this is my command: /biosoft/quickmerge/merger/quickmerge -d out.rq.delta -q /data3/haidu/origin/genome/huada/scaffolds.fasta -r /data3/haidu/origin/genome/huada/nuohe.fasta -hco 5.0 -c 1.5 -ln -ml 5000 &

and it turned:terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_M_construct null not valid

if you have solved the problem ,can you give me some advice?

Thank you, haidu

just for people who have the same problem, check -l n, the n should be N50 of the self assembly

[mahulchak]

Your-ln option is missing an input

On Wed, May 31, 2023 at 1:30 AM sqwwww @.***> wrote:

Hi I also had a same problem this is my command: /biosoft/quickmerge/merger/quickmerge -d out.rq.delta -q /data3/haidu/origin/genome/huada/scaffolds.fasta -r /data3/haidu/origin/genome/huada/nuohe.fasta -hco 5.0 -c 1.5 -ln -ml 5000 &

and it turned:terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_M_construct null not valid

if you have solved the problem ,can you give me some advice?

Thank you, haidu

just for people who have the same problem, check -l n, the n should be N50 of the self assembly

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