Midori Harris

I find this pattern a little confusing, such that I'm not sure whether I'd use it for FYPO (and if so, for which phenotypes). In particular, I don't think I...

tl;dr: @jseager7, could you see if PATO:0000694 will do? As I suspected, dictionaries say that "expedite[d]" can mean either "happens sooner" OR "takes longer"; I'm not aware of any ontology-world...

@jseager7 Glad it works for you! I don't see any reason why PATO couldn't add the 'related' synonym anyway, to help with future searching.

Yes, we have lots of terms in FYPO for abnormal protein localization, and _lots_ of annotations using them. The subtypes are differentiated by increased/decreased/abolished, and by where the protein would...

You can see some examples of FYPO terms, and annotations with "self" and "non-self" extensions on PomBase ontology term pages, e.g. for decreased protein localization to nucleus: https://www.pombase.org/term/FYPO:0004455

Well, I'll try, but this is an area that I don't think is completely sorted yet anyway ... The logical definitions currently in FYPO mostly use GO biological processes from...

I also just spotted that the SO:0002021 text definition just got copied over from SO:0001914, without the necessary text edits. It should be: A DNA motif that is found in...

Update: I've just learned of a second fork barrier in the pombe mating-type locus. So we could do this: 1. id: SO:0001914 name: rDNA_replication_fork_barrier REMOVE synonym: "RTS1 barrier" EXACT []...

< bump > I'm now adding some phenotype ontology terms for effects on pausing at the two different mating type region fork barriers (in PMID:26201080), so it would be useful...

We don't have anything quite like this in FYPO, and I would have the same question as in #330 about a process that doesn't happen. But this pattern looks reasonable...