magibc

Dear developers of ETE-Toolkit, I'm trying to use your software for my first time. Nevethless I have a problem which also occurs if I use the toy example in your...

Denoise step still running after 10 days

3

Hi, In the past I have analized MiSeq 16S sequenced samples with your general protocol without any problem (https://benjjneb.github.io/dada2/tutorial.html ). Nevertheless, now I am trying to perform DADA2 with 1000...

Construct a phylogenetic tree from Kraken2 in order to use in phyloseq object

4

Hi, It's my first time analysing metagenomics from a shotgun experiment but before to post this issue I tried some strategies to overcome the topic described below. I would like...

Performing the robust Aitchison transformation prior to interpretative multivariate analysis (db-RDA)

1

Dear @cameronmartino Cameron, The RPCA tool inside Gemelli performs these two steps: 1. Compositional preprocessing using the centered log ratio transform on only the non-zero values of the data (no...

Hi @cameronmartino and @mortonjt and other developers of DEICODE plugin, For reviewers requirements, I need to compute DEICODE and Gemelli in different otu_table (outside QIIME2, as standalone). As first attempt...