Federico Mattiello

`sim.fmsm()` different results with `tidy=TRUE` vs `tidy=FALSE`

2

The MRE below shows that only uncensored paths are returned when `tidy=TRUE`. Is this on purpose @chjackson? I couldn't find reference to this behaviour in the help page. I think...

Propose to add _"miscalibration"_ plot

3

Instead of plotting `y` _vs._ `x` in the calibration plot, drawing `y–x` _vs._ `x` gives a _miscalibration_ plot, which is focusing on what is most interesting: deviation from equality. I...

Allow otu_table to be *sparse*

2

As often abundance data matrices are full of zeroes, it could be useful to allow `otu_table(physeq).@Data` slot to accept also _sparse_ matrices, I'm thinking to `dgCMatrix-class`. Is it feasible? Would...