Emmanuel Noutahi

Hello @WZo0o, can you try another python version ? I will try to reproduce the error and come up with a fix this weekend, but the column summing to zero...

Hi @orena1, It's because the R implementation has a C backend (code converted from fortran), while mine use f2py for wrapping around the fortran source code. Unfortunately, the `stop` statement...

Thanks for the details. I will look into it as soon as I can. But looking at your input, a segfault might indeed be expected. The exact method need to...

Hello @mercurio83. What's your hardware ? if you are using a MacBook, you might need to download from github and recompile the fortran binaries yourself. See https://github.com/maclandrol/FisherExact/issues/2. Let me know...

Can you post your contingency table ? Without simulation, when your entries are too large, there is an out of memory exception that directly kill python.

If you are using a windows computer, long is 32bit instead of 64 (check sys.maxint). But the main problem is your table. To compute the p-value, there is a need...

The overflow error and table limit for simulation should be fixed with commit b1ec15876ce1f3216488c7a008b45a0c26e3a68b. However, I'm unable to test it on windows. If you have some time, let me know...

@zhiyzuo. It would be helpful to have your input data. Also I planned to rewrite everything in Python soon.

Good point, I remember looking at that and did not find any way to know the current state of `PreferCoordGen` from python in order to restore it.

Hi @matudor , you are right indeed that the current ECFP parameter, leads to FCFP fingerprints. Are you willing to submit a PR ?