Mackenzie Snyder

Mackenzie/add modalities to quick

2

- add dsegtissue to hippunfold_quick - add image_modality dict with suffix (for dseg vs dsegtissue purposes and consistency) and use_derivatives - if dsegtissue is the modality: add desc to file...

Add dsegtissue to hippunfold-quick

3

- add the dsegtissue modality to hippunfold-quick - dsegtissue requires an additional input [--derivatives [PATH ...]] - from my understanding, this path variable also needs to be collected from user...

run_inference fails on CBS basic for the --use-conda flag

4

- When the --use-singularity flag is specified on cbs basic run_inference works - command run: `hippunfold ~/Desktop/lowresMRI/ /localscratch/hipp_output participant --use-conda --modality T1w --cores all` Error message: ``` /usr/bin/bash: line 1:...

**To recreate the issue:** - run hippunfold-quick - run another hippunfold process in a different terminal to the same output folder as hippunfold-quick, while hippunfold-quick is running **To fix:** -...