Zhijian Li

Hi @ceegeeCode Thanks for reporting this error. The reason why we use if-clause is if the start of a region is out of chromosome size, it's not possible to do...

Hi Christian, > thanks for the swift answer! If I understand it, just setting the signal to 0 for these start regions (what I did by out-commenting that loop) should...

Hi, Thanks for reporting this issue. I will try to fix it. best, Li

Hi @jkperciaccante This error was caused by setuptools (ver > 59). Can you try the following: ``` pip install setuptools==58 pip install rgt ``` and see if the problem is...

Hi, Thanks for your feedback. Currently, in the footprinting step, we didn't limit the number of cores. I will try to add this in our next release. :) For differential...

> Hi, thanks for developing such nice tool suite. > Small comment, several tools like `rgt-hint differential` or `rgt-hint footprinting` which are using BAMs require that the BAM indexes are...

Hi @rm1238 Can you check the input regions to if how the chromosome was named? Specifically, the mpbs_regions file.

Hi Ricardo, Sorry for the late reply. To figure it out, would it be possible for you to share some data that can reproduce this error? I will then dive...

Hi @mdurante1 , The y-axis is the average ATAC-seq signal around the predicted transcription factor binding sites. In our last release, we provided the option --output-profiles to write the footprint...

@minashaigan Any ideas about this issue?