Levi Waldron
Levi Waldron
If I understand correctly, AAVS1 is a virus integration site within the PPP1R12C gene, and Cpamd8/Mug2 are both synonyms for a protein-coding gene. In the AAVS1/PPP1R12C case they are different...
Just a quick reply in generalities, can provide more specific code if helpful. There isn't a a 1:1 relationship between aliased and current symbols, but if you are not too...
I see what you mean @Rendan86 : ```r > checkGeneSymbols("2-Mar") Maps last updated on: Thu Mar 25 08:36:49 2021 x Approved Suggested.Symbol 1 2-Mar FALSE MARCHF2 /// MTARC2 Warning messages:...
Document in https://github.com/waldronlab/lefser/blob/master/R/lefserAnalysis.R: ``` #' @param kw.threshold #' @param wilcoxon.threshold ```
Document how to set a LDA effect size threshold?
I've added a code coverage badge - should be not too hard to get coverage approaching 100% for this small code base.
Tests have been added.
It's a different error now. Also should understand these warnings. ``` results
Hi @seazzle , I've given you write permissions.
You still haven't accepted the invitation I sent you :)