Levi Waldron

I think they're both viable projects, one documentation-focused, the other data wrangling-focused, so it will depend a bit on your interests. To tell you a little more about my suggestion,...

Great, Sarath! We should have a group call perhaps next week to sync up. Do you have time limitations? @link-ny let’s talk this week then propose some times. -- Levi...

How do you install and test when developing locally - with `install.packages` or `devtools::install`?

Thanks Martin, I learned a few things from these solutions! The first one is adequate for my purposes, up to you whether the cost-benefit of implementing a conditional return value...

I'm looking for guidance on the Biobakery forum: https://forum.biobakery.org/t/converting-metaphlan3-profiles-to-gtdb/6292

I re-posted my question on bioBakery. Pinging @seandavi to request adding gtdb profiles to the next version (apparently available as of MetaPhlan 4.0.6 - https://github.com/biobakery/MetaPhlAn/releases), pending investigation of how much...

I just spoke with a member of the MetaPhlAn development team. The translation tool (https://github.com/biobakery/MetaPhlAn/blob/master/metaphlan/utils/sgb_to_gtdb_profile.py) isn't implemented for MetaPhlAn3, because of a complication that the mapping to GTDB is not...

This was already updating/building in two separate steps, try using bioconductor_docker:devel tag in https://github.com/waldronlab/enrichOmics/commit/ffd3bf583302097c168d73488b8d274294efd9e7

Ideally this would also include the table for each dataset, translated into Markdown (e.g. using one of the [Markdown table generators](https://www.google.com/search?q=markdown+table+generator&oq=markdown+table+generator&gs_lcrp=EgZjaHJvbWUyBggAEEUYOTIHCAEQABiABDIHCAIQABiABDIHCAMQABiABDIHCAQQABiABDIICAUQABgWGB4yCAgGEAAYFhgeMggIBxAAGBYYHjIICAgQABgWGB4yCAgJEAAYFhge0gEIMjc1MGowajeoAgCwAgA&sourceid=chrome&ie=UTF-8)), as well as the cell filtering and annotations information...

Hi @JHYSiu, could you provide us with a reproducible example, using a file/dataset that we can access? I couldn't tell what you were doing when the error occurred. Note, the...