Luu Phuc Loi

java.io.IOException: User limit of inotify instances reached or too many open files

8

I have a simple bpipe as here run { "%_R*.fastq.gz" * [ fastqc + trim_fastq + alignment + [ flagstat_lane , BaseRecalibrator + PrintReads ] + move_lane_bam ] + "%.move"...

How to recude the polling frequency on PBSpro?

8

I have recently run Bpipe to submit jobs to PBSpro. And getting complaint about high frequency of polling to the cluster. Are there any options to reduce it and how...

Resuming problem

2

Hi All, I have a problem to test resuming capacity of Bpipe. Here is my code test3.pipe --- hello = { exec "echo Hello" exec "ls" exec "sleep 30" exec...