Lukas Forer

icon indicating a website link http://www.forer.it

icon company Genetic Epidemiology, Innsbruck Medical University icon location Innsbruck, Austria icon location Hello, I’m Lukas Forer, a researcher and software developer living in Austria. I love building scientific applications that are efficient and beautiful.

Results 5 issues of Lukas Forer

Fix errors in write-ped

- use correct prefix instead of creating out.ped - dereference `hevecs` array in order to join the PCs (now there is something like ARRAY(0x1234567) in out.ped)

Add test-execution optimization and sharding options

3 comment

This PR addresses #199. ### Optimizing Test Execution #### `--related-tests ` Finds and executes all related tests for the provided .nf or nf.test files. Multiple files can be provided space...

is there a way we can allow for deliberate snapshot matching?

3 comment

@lukfor, is there a way we can allow for deliberate snapshot matching? I've actually found it very useful to be able to have multiple tests refer to the same snapshot...

Improve gzip file check

1 comment

This PR addresses issue #181 and improve gzip file-check in md5 method. Todo: - [ ] Adapt error message/exception when gzip file is empty - [ ] Add more testcases

Snapshot Transformer

9 comment

This PR uses JSONPath selectors to remove, replace or map elements in snapshots. Happy to hear your feedback! (especially @sateeshperi @nvnieuwk @maxulysse @adamrtalbot) Related issues: #211 and #116 ### Snapshot...