Luke Czapla

Ok, actually I was wrong, it still throws an error (I forgot to recompile! haha). So Serialization with the Structure class doesn't work. The error is very similar to what...

here's the code so it can be reproduced (*NOT* using my code at all, but just serializing a Structure): https://gist.github.com/lukeczapla/7b87e70947e8ed5732f04bd07d113629

Oh yes, my original test was with the class I knew was serializable (BasePairParameters class with the Structure object marked transient) with the same methodology, and it worked. I understand...

Thanks so much, I appreciate looking into it for me. I had used StructureIO.getStructure() and it seems to work with the RCSB and choose mmCIF by default. I personally prefer...

and my Excalibur just pushed 23 ns/day anyway vs. 21 ns/day so it's just about integrating that guy with the all-atom coarse-grained models of DNA that are way more feasible...

you know I'm just playing - but not about the requests here, they would be super helpful and then someone else can actually jump in and it's not just a...

I know all my junk on simtk was like superdead, so this is it here right?

point taken. go discuss this too though, totally legit also and the copyrights on the makefiles I fixed up for u were 2009 so 2012-2013 was my best guess on...

Cool, I'm going to have to apologize for missing a couple things in the docs there (the .rst files are just the package to build the docs u see on...

NAMD had made it easy to just say gimme colvars every 1 step but we're doing OpenMM here, I have to give 2 distances and 10 dihedrals so it was...