Lukas Drescher
Lukas Drescher
I'm working on an [Arbor cable cell](https://docs.arbor-sim.org/en/stable/python/cable_cell.html) exporter for BluePyOpt optimized cell models (related to https://github.com/arbor-sim/arbor/issues/1839) and looking for feedback here. I've added a `create_acc` module analogous to `create_hoc` in...
This is functionality to support Arbor simulations with cells optimized with Neuron in BluePyOpt as implemented in https://github.com/BlueBrain/BluePyOpt/pull/393 and related to https://github.com/arbor-sim/arbor/issues/1839. It includes exported versions and example scripts for...
The BluePyOpt integration would benefit from adding support for the thalamo-cortical cell example. The main feature this example will demonstrate is single cell optimization with non-built-in mechanism catalogues. As discussed...
That works on myelin and the `len(self.icell.myelin) == 1` looks like a bug given that NEURON crashes, complaining that the section was deleted upon accessing e.g. `self.icell.myelin[0]`. I've added safe...
In the BluePyOpt integration, a validation test between Arbor and Neuron has been developed and evaluated for the BBP catalogue that is used in the [layer-5 pyramidal cell](https://github.com/BlueBrain/BluePyOpt/tree/master/examples/l5pc) model. While...