Luisa Hugerth

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icon company Uppsala University icon location Uppsala - Sweden icon location Assistant professor at Uppsala University, investigating how the microbiome affects women's health. Previously @ctmrbio

Results 3 comments of Luisa Hugerth

Low bacterial biomass and several batches

Thanks for the reply! I had already done most of the steps above, including removing all 18S and mitochondrial sequences. The insight I had today was taking it to genus...

Segmentation fault in STEP 4: CONVERTING KMER MAPPINGS INTO READ CLASSIFICATIONS

Has anyone managed to tweak `kraken_processing.cpp` for it to print out the taxon/sequence which causes the segfault? Or gotten any information at all from a log file? My build crashes...

Segmentation fault in STEP 4: CONVERTING KMER MAPPINGS INTO READ CLASSIFICATIONS

Has anyone managed to tweak `kraken_processing.cpp` for it to print out the taxon/sequence which causes the segfault? Or gotten any information at all from a log file? I have also...