Luca Venturini

@SethMMorton Thank you for the quick answer. The version which triggers the error is the latest (3.0.0). As for the input that causes the mistake, we think it was a...

Dear @lotus-devo , Most probably the issue is that you are using Python 2.7. Should you switch to Python3, the code should become syntactically valid and therefore PyGeno should function...

@malonge Seen as well when trying to use RaGOO on a species with a large genome (>10Gbps). The out-of-memory problem also happens, in my experience, at the earlier stage of...

I did correct this in my trunk, I will open a PR soon.

OK, thanks! I was thinking of using Minimap2 (https://github.com/lh3/minimap2) because on my tests on Arabidopsis, minimap2 + CESAR2 beated progressiveCactus + CAT. Minimap2 though is not perfect for my purpose,...