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Let gridmap support using num_proc as resource complex values

1

When apply to some SGE environments, especially some jobs do need to be run in multi-processes mode，the number of processes need to be requestable and consumable as the key complex...

Stale file handler error when using sge as executor.

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@ssadedin I use bpipe-0.9.9 tar ball, and have changed the file: 'templates/executor/sge-command.template.sh' :L2 from #\$ -wd ${bpipe.Runner.canonicalRunDirectory} to #\$ -cwd because the former one did not work correctly. And now...

An standard_gHGVS and standard_cHGVS need to be added to final returned BedAnno::Anno object keys to maintain this format of HGVS string.