lshep

asset is not a standard top level directory. What is this and what does it contain? Bioconductor recommends the use of basilisk over reticulate. Please update. Vignettes should use a...

Please also provide an `inst/scripts` directory that describes how the data in `inst/extdata` was generated. It can be code, pseudo-code, or text but should minimally list any source or licensing...

Did you do a valid version bump to 0.99.1? Bioconductor will only recognize changes with a valid version bump

The docs directory should be removed. These documentations should be generated automatically with R CMD build. Seurat objects are not Bioconductor objects. This package should be altered to additionally be...

Agreed regarding Seurat/Bioc object conversion. https://satijalab.org/seurat/archive/v4.3/conversion_vignette looks like there was at least some effort to make some standardized conversions between objects; however I don't know how mature it is or...

We try to have progress within 2 weeks. We are a little behind from the annual Bioconductor conference that occurred last week. We will aim to do another processing of...

INDRA is licensed under a different license BDS 2-clause license , and per that licensing agreement says that if used it has to be distributed with and reference the license....

Please fix the support site error seen on teran2 report and kick off a new build report with a valid version bump before a reviewer is assigned

@tonywu1999 may we expected updates and comments to the review soon?

**general** - [ ] Your git direcotry should not include a renv directory and renv.lock. We would also prefer Dockerfiles and pkgdown sites not to be checked into Bioconductor. Please...