Luis Quintanilla

icon company Genentech icon location Computational biologist working to advance drug development through biomarker discovery and development in Inflammatory Bowel Disease.

Results 2 comments of Luis Quintanilla

Conversion of h5Seurat object to h5ad not capturing RNA assay after integration

I'm having a similar issue. Did anyone resolve this? I've tried the following: **In R** obj is an integrated object consisting of 80 samples `obj = readRDS(paste0(directory,"obj.RDS"))` `DefaultAssay(obj) = "RNA"`...

Conversion of h5Seurat object to h5ad not capturing RNA assay after integration

Try the following: #remove scale data slot we want the total number of dimensions to be the 32K genes and not the scaled 2K genes obj = DietSeurat(object = obj,...