DEGreport
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lpantano
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Hi, I'm trying to run DEGreport following this tutorial http://bioconductor.org/packages/devel/bioc/vignettes/DEGreport/inst/doc/DEGreport.html. I have installed and loaded DEGreport 1.18.1. when I try to run " degCheckFactors(counts[, 1:6])", I keep getting the following...
Talk to David to see if we can add this to here. Example in conference was for miRNA, any count data can be used.
Avoid asking for extra information. PCA should be able to plot only with count matrix
the tools only compare one group vs other. The idea will be to upgrade so it is able to compare any FC from any design like interactions or after blocking...
Hello, First of all bear with me as I'm not very proficient in R... I used an older version of DEGpatterns (DEGreport_1.30.3 running on R version 4.1.2). However, I wanted...
Hi, I used the following code to 1) get the significant genes that change based on time of day using LRT, 2) vst transform the data and find clusters based...
Hi, First of all, thanks for developing this package! It makes visualising DEA results easier. However, I've been having trouble to use the function, degMerge, to find similar patterns in...
Hello! I am doing the RNAseq data analysis. When I try to run degPatterns with deferentially expressed genes. The plot with all clusters is visualized, but afterwards I got an...
