lopollar

When segmenting nuclei, I often end up with similar issues, where one or two pixels end up outside of the shape. However, when performing segmentation on whole cells, I often...

It is 2D segmentation using the cyto option. The problem arises for me when creating shapes (with shapely) out of the masks after the segmentation. However, when plotting the masks,...

Hi, For me, the first feels like how I wouldcode it myself, so I would prefer that one! Thank you for taking my suggestion into account!

Thank you for this issue, had the same problem and not using pygeos solved the problem, amazing.