Luka Topalovic

CNVkit coverage takes too long on CRAM file

1

# Issue description Hi all, thanks for great tool and good documentation, so sorry if I am missing something. I am running CNVkit to create a reference using a mix...

Running LongQC always returns Killed error

1

Hi, thanks for creating LongQC. I am trying it on PacBio subreads BAM file which has 160 GB, but I am always getting Killed error. Here is my command: `...

Issue with running LeafcutterMD.R

4

Hi all, I wanted to use LeafcutterMD.R script, with this command line: ` /opt/leafcutter/scripts/leafcutterMD.R --num_threads 4 clust_perind_numers.counts.gz` However it returned following error: ``` Loading counts from clust_perind_numers.counts.gz Settings: $output_prefix [1]...