loipf

sampleSwaps bugfix

2

for samples with a low read depth, it can happen that no SNP/variant is found per sample and the `vaf` column in `rc_af` contains only NAs. This causes problems in...

error.converter: unsupported operand type

1

hi all, I am trying to annotate a project .vcf file retrieved from GLnexus with OpenCRAVAT. the .bcf file file gets converted to an .vcf file with: `bcftools view |...

hi, similar to https://github.com/sickcodes/Docker-OSX/issues/342, is it possible to edit the Dockerfile `docker-osx:auto` to install a few more packages and share this Dockerfile then? in detail, I would like to add...

dev branch works only on the first sample

4

### Description of the bug I know it is still work in progress, but the new version of this pipeline `https://github.com/nf-core/rnavar/tree/dev` seems really promising. However, it only takes the first...

Modifications per read summary

3

Hi, first, great tool! Is there some way to get a summary per read how many modifications are present? it could be done with `modkit extract full` and then sum...