lmulroney

Hi @villegmb, Just for a little more context, can you share the command you were trying to do to open the database? Thanks, Logan

Hi @villegmb, Just a few more quick questions, and some possible solutions assuming some things about your setup. Was the db generated on a linux, windows, or macOs machine? Are...

Hi rania-o and JannesSP, I apologise for the lack of activity here last year. How long is your reference sequence? If it is near 100 nt long then you may...

Dear Xu, I'm really sorry that it has taken me this long to get back to you on this. I recently had to redo this analysis and couldn't exactly replicate...

Dear JeremyQuo, Sorry for the lack of activity last year. This is due to a mismatch in the reference file used and the sequence in the fastq file. If the...

Peaceben and Wardale, Sorry for the extremely long delay in responding to this. If you're still using nanopore to evaluate these datasets, could you possibly share the header line of...

Thanks for letting me know that it worked for you locally Ben, I'm closing this issue. Cheers, Logan

It does seem strange that you have a lot of sites which have significant p-values but low absolute values for the log odds ratio. Without knowing anything about your experimental...

By default, the position reported in the pos column refers to the first nucleotide of the kmer. You can adjust which position relative to the kmer is reported by changing...

Hi @g-s-2018, Because of the nature of the nanopore, 5 (RNA002) or 9 (RNA004) nucleotides are in the sensitive region of the nanopore at any given moment. The ionic current...