enveomics
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lmrodriguezr
Scripts and reference libraries at Kostas lab.
Hi, I am trying to use the ANIr script to estimate the ANI of reads against genomes. To do this, I have created a CONDA environment with `Ruby v2.4.5p335` and...
This script is really helpful, thank you. I just wondering if it is possible to obtain the intermediate files for ani.rb. Thank you
We use inlinedocs to document enveomics.R, but this package has be retired from CRAN. While it's still available in the archives, it'd be preferable to translate all the documentation to...
Not really an issue but a suggestion: The script could provide an option for reporting genes/proteins not recognized as OGs. thanks!
The `FastA.tag.rb` is producing `tmp` files that get removed and is not tagging with genome names. See report by Minjae Kim: > (1) In the line of FastA.tag.rb -i $ORG/01.proteome/$b.faa.tmp...
When using HMM.essential.rb and two or more copies of a gene are detected, how is the one reported selected? would it be possible to just select the longest one (even...
I have a question regarding the use of AAI for assessing genomic relatedness of metagenome-aseembled genomes to isolates' ones. I thought that I would rather post it here even if...
Hello, Documentation website (http://enve-omics.ce.gatech.edu/enveomics/docs) seems to be down since at least Christmas holiday of the last year. How can I access to the website? Thanks.
A recent update increased running time for some runs. This should be explored.
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Scripts and reference libraries at Kostas lab.