Leland McInnes
Leland McInnes
Thanks for the reproducer. I'll try to look into this when I get a little time.
You shouldn't be needing anywhere near 256Gb of memory for that computation, so something is clearly going very astray. It may be a joblib related issue and not actually related...
I'm afraid I don't have too much more advice I'm afraid. This seems quite peculiar.
There are a number of reasons it could be having problems. It's hard to diagnose with more detail (and the error messages from numba are unfortunately *very* long, so it...
I admit to being a little baffled. If pynndescent is installed it should be able to find NNDescent in it; is it possible envrionments are getting crossed or confused somehow?...
That definitely looks underwhelming. How does t-SNE compare, or PCA? There may be less structure in the data than one might like. It looks more likely, however, that those two...
If you have some time, the relevant thing to do is run the internals yourself step by step and look to see where things are getting swamped. In particular if...
Hi Graham, Sorry for the very long delay on ever getting back to you on this. I got rather invested in building the new version of UMAP (which I was...
Those are some nice results @vb690 ; would you mind if I referenced them in the example uses section of the documentation?
Both the inverse transform and transform are stochastic approximations, so there is going to be some noise involved in this. Unfortunately this means that round-tripping like this is unlikely to...