lmReef

## Overview Changed `documentation` links in `meta.yml` files to point to more informative pages in the [rtg tools documentation site](https://realtimegenomics.github.io/rtg-tools/index.html) rather than the [github page](https://github.com/RealTimeGenomics/rtg-tools) - rocplot - pedfilter -...

[WIP] Show included modules on pipeline pages

6

Preview for #2722 

General refactor and format

4

## Overview - slight refactor of some config for improved readability - the main refactor to be aware of is 451da461c300ad154adc2098b4a983943d872e2e - ran nextflow formatter over everything everything still runs...

You may be aware, there's an official test repo with a dualrnaseq branch. This does need to be linked up and work. I had some issues getting the test files...

upgrade to nextflow v25

2

## Overview Update to get the pipeline nextflow version `^25.04.2` compatible which ended up just being a bit of config refactoring - refactored `nextflow.config` - `nextflow lint .` still very...