llk578496

Hi, I got the exact same problem too.

Hi all, I got the exact same issue too. I failed to install through miniconda.

I have just installed nullarbor by creating an environment python=3.6. Thank you very much for your help!

Thank you so much!

@rpetit3 I think not then often and quite random. The last update was on 2022-Jan-10. https://pubmlst.org/bigsdb?db=pubmlst_plasmid_seqdef&page=status You can see from this link for the status of plasmid typing database.

[Clair3](https://github.com/HKU-BAL/Clair3) or [Medaka](https://github.com/nanoporetech/medaka)+[Longshot](https://github.com/pjedge/longshot) might be good for haploid variant calling.

I prefer using Clair3 because it is easier.

[Call variants in non-diploid organisms (Haploid calling)](https://github.com/HKU-BAL/Clair3#call-variants-in-non-diploid-organisms-haploid-calling) Hope this tutorial might help!

Thank you very much!

Thank you so much! We really look forward to it!