Liz Ing-Simmons

TOBIAS ATACorrect fails on some datasets, without any error message

4

Hello, I'm running TOBIAS on aggregated data from different single-cell ATAC-seq clusters. The ATACorrect step fails on a subset of clusters without any error message, but works on others. It...

Option to adjust geom_point stroke for FeaturePlot, DimPlot, etc to allow for smaller points

1

I often find that when I'm plotting relatively small plots (e.g. 4x4 inches pdf) with many points, reducing the point size with the`pt.size` argument to `FeaturePlot`, `DimPlot`, etc, seems to...

**Describe the bug** I'm running CellOracle in parallel on a computing cluster (using sge), and stochastically some of my jobs are failing with an error `KeyError: 'params'` coming from gimmemotifs...