Livnat Jerby

Is it possible to compute the p-value of overdispersion for given gene sets in a more strict manner as done for the denovo identified pathways? The gene sets I'm working...

Hi, I've tried regressing out (continuous) confounders (e.g., cell cycle) so that the differential expression results won't be effected by them, but it doesn't work. I get the same results....

Hi, Thanks again for making this great and very useful algorithm accessible :). I have a question concerning the output of the pagoda.varnorm function. The "mat" output is the normalized...

Hi! Thank you so much for providing this code. Very useful! I get an error when trying to run pagoda. This is something that didn't happen in the past. When...