Qiushi Liu

Missing output from alphafold prediction

6

Hi there, I used docker to run alphafold and here are my output: `(alphafold) qiushi@Qiushi-AWM15R3-2K9L9II:~/af2/alphafold$ nvidia-smi` output:  Then I ran: `python3 docker/run_docker.py \ --fasta_> --fasta_paths=/mnt/h/AF_prediction/T1083.fasta \ > --max_template_date=2020-05-14 \...

non-docker AF2 on HPC cannot use GPU xla_bridge.py:257] No GPU/TPU found, falling back to CPU. (Set TF_CPP_MIN_LOG_LEVEL=0 and rerun for more info.)

1

Hi I am planning to use non-docker version on the HPC with GPU I use https://github.com/amorehead/alphafold_non_docker I found the `run_alphafold.sh` is nor working well so I checked this one https://sbgrid.org/wiki/examples/alphafold2...

multimer model error:config_dict.py", line 903, in __getitem__ field = self._fields[key] KeyError: 'data'

1

## Expected Behavior could predict the protein complex structure ## Current Behavior error occurred. ## Steps to Reproduce (for bugs) I am following the localcolabfold and I am able to...