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                                            liu-pinnng

output files made by SquigglePull.py containing nothing

Hi, Thank you for your quick reply. Python version: Python 3.6.10 Single fast5 file Command as python SquigglePull.py -r -p downloads/SquiggleKit/example/test.fast5/ > data6.tsv Operating system: macOS 10.14.6 Ping

output files made by SquigglePull.py containing nothing

Thanks for your kind comment. I used this comment. python SquigglePull.py -r -p downloads/SquiggleKit/example/ > data6.tsv But still, nothing containing in the .tsv. The data I used was downloaded from...

output files made by SquigglePull.py containing nothing

Still does not work.

output files made by SquigglePull.py containing nothing

I worked in the following command. (envs) PINGdeMacBook-Pro:SquiggleKit pingliu$ python SquigglePull.py -r -p downloads/SquiggleKit/example/ --multi > data.tsv

output files made by SquigglePull.py containing nothing

It seems to work by adding ~/ in the front of the path. However, when I tried to use my own .fast5 with --multi, the key error showed as follow:...