Li Shen

icon indicating a website link http://www.linkedin.com/in/lshen/

icon company Icahn School of Medicine at Mount Sinai icon location New York City icon location I'm an academic researcher with many years of experience developing machine learning algorithms and bioinformatic software and analyzing genomic data.

Results 2 issues of Li Shen

A potential bug that may mask the start and stop tokens

1 comment

https://github.com/songlab-cal/tape/blob/3d3657be86efb3a41fede18eded3554975069776/tape/datasets.py#L351 If I understand your code correctly, this line shall be `continue` instead of `pass`. If you use `pass`, the code will continue to mask the start and stop tokens...

bug
quick-fix

What's the purpose of "ignoring last label" in this loss function?

1 comment

See code: https://github.com/aurora95/Keras-FCN/blob/35afe12e514a3bf5e56bc90e69d5b329ce9ae68d/utils/loss_function.py#L14 https://github.com/aurora95/Keras-FCN/blob/35afe12e514a3bf5e56bc90e69d5b329ce9ae68d/utils/loss_function.py#L15 https://github.com/aurora95/Keras-FCN/blob/35afe12e514a3bf5e56bc90e69d5b329ce9ae68d/utils/loss_function.py#L16 At first you appended an additional column of all 0's in one-hot coding and then removed it. It seems to me you only need a...