SRA_Metadata
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linsalrob
SSL certificate problem: certificate has expired
Hello - I'm not sure if you're maintaining the database, but I ran into this issue on my mac:
$ curl https://edwards.sdsu.edu/data/sra/current.tar.gz > current.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (60) SSL certificate problem: certificate has expired More details here: https://curl.haxx.se/docs/sslcerts.html
curl failed to verify the legitimacy of the server and therefore could not establish a secure connection to it. To learn more about this situation and how to fix it, please visit the web page mentioned above.
This is fixed now. My apologies
Closes #1
Rob
On Wed, 16 Dec 2020 at 04:51, Stephen Nayfach [email protected] wrote:
Hello - I'm not sure if you're maintaining the database, but I ran into this issue on my mac:
$ curl https://edwards.sdsu.edu/data/sra/current.tar.gz > current.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (60) SSL certificate problem: certificate has expired More details here: https://curl.haxx.se/docs/sslcerts.html
curl failed to verify the legitimacy of the server and therefore could not establish a secure connection to it. To learn more about this situation and how to fix it, please visit the web page mentioned above.
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Hey Rob - looks like the last update of your JSON file was 18-Sep-2019. Would it be easy for your lab to update this file? If not, any tips on getting the SRA metadata without having to unpack and parse the millions of files in SRA's tarball of xml files? The SRA_Accessions.tab and SRA_run_members.tab files don't contain much info. For a while I was using the sqlite database from SRAdb, but that group stopped updating it for a while.