lingolingolin

Hi @ploy-np , I have the same question. Your great software has been out for quite a while. But it would be nice to have a detailed documentation of the...

Thanks a lot @ploy-np for your prompt reply. so if a site meets the conditions below: ``` z_score_unmodified_sample - z_score_modified_sample

Hi @ploy-np , Thanks for your detailed explanation. by t-test, i mean what you have in your demo *yml* file: ``` method: prefiltering: method: t-test threshold: 0.1 ```

thanks a lot @ploy-np. this is truly helpful.

Hi @ploy-np , Thanks a lot for your reply. Does the species have to have an ensemble annotation? I am working on a species with custom annotation. Also, do you...

Hi @ploy-np , Thanks very much for clarifying my doubts. I am using a genome with very few slicing events and i treated it as transcriptome when ran xpore. :-)...

Hi @ploy-np , Thanks a lot. That was what i did to generate transcriptome. I still got the same (pandas associated) error message -- **KeyError: 'contig**. However, when i extract...

Hi @ploy-np, The commands i used: `xpore-dataprep --eventalign transcript1.ko1.aln.tsv --summary ko1_dataprep/ko1.evn.aln.summary.txt --outdir singletranscript_dataprep_ko1` and eventalign output  Let me know if you need more details. Thanks a lot.

Hi @ploy-np , thanks a lot. My email is [email protected]. I will be very happy to have a chat with you to fix the problem.

Hi @mparker2 , In my case, the inconsistent order of read index in the summary and that in the eventalign files from Nanopolish output may have caused the problem.