lindsdudley

grep flags /proc/cpuinfo | head -1 flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2...

I'm a bit confused about the gdb command you use got confused by the output. Can you tell me what you are trying to look for?

(metacells) lindseydudley@pop-os:~$ gdb 'which python3' GNU gdb (Ubuntu 12.1-0ubuntu1~22.04) 12.1 Copyright (C) 2022 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you...

Hi Oren, Sorry for the confusion as I have never used gdb before. This is what I have as the output when I try to specifically debug the jupyter notebook...

Hi Oren, After playing around with gdb and creating a test script based off of the jupyter notebook. This is the output I get. Please let me know if this...

Here is my test_op.py script. I just took the code from the one pass jupyter notebook and put it into a python script. mport anndata as ad # For reading/writing...

Hi Oren, Thank you so much for your response! This seems to have just been a copy paste error and I'm so sorry. Here's my gdb with the corrected script....

[top.txt](https://github.com/tanaylab/metacells/files/14963637/top.txt) I have attached my top output while running the program. Please let me know if anything jumps out at you that could help me debug! I appreciate all of...

436067 lindsey+ 26 6 52.1g 9.2g 123648 D 18.5 7.3 0:10.34 python 431698 root 20 0 0 0 0 I 10.3 0.0 0:06.35 kworker/u65:8-kcryptd/252:0 434629 root 20 0 0 0...

This is my top when doing it interactively. My computer actually has 128 GB ran and a CPU so I don't think that memory is the limiting factor.