limin

> HI > > [Kin002_nano_QC.txt](https://github.com/rrwick/Filtlong/files/4074060/Kin002_nano_QC.txt) > I made read_info_histograms.sh work to check my nanopore long reads quality, and found that the output of the MEAN QUALITIES are not right. Could...

> ANI is computed over the aligned (or conserved) fraction of genomes. That's how it's been defined in the early papers. > > You're right, 60 out of 100 fragments...

Hi rneher, thank you for the quick response. I have all the dependencies installed. I use "conda install -c bioconda raxml", it says packages installed. While when I run raxml,...

> what is inside?: > /Users/dklabuser/limin/pan-genome-analysis/data/TestSet/protein_faa/diamond_matches/diamond_blastp_reference.log > /Users/dklabuser/limin/pan-genome-analysis/data/TestSet/protein_faa/diamond_matches/mcl.log Here is what inside 👍: > /Users/dklabuser/limin/pan-genome-analysis/data/TestSet/protein_faa/diamond_matches/diamond_blastp_reference.log diamond v0.9.24.125 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates....