Jie Li

Hi, I just accidentally found that one of the genes start with Met in faa file, however, it starts with GTG which is Val in ffn file? This confused me...

I've got a result like below without --cdsrnaolap set. contig_7_pilon Infernal:001001 misc_RNA 275421 276175 457.7 - . ID=bins.tsv.054_01659 contig_7_pilon Prodigal:002006 CDS 275498 276202 . - 0 ID=bins.tsv.054_01660 Would you mind...

Output full lineage information

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Hi, I am wondering if bracken can output full lineage information identified like "Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Rhodocyclaceae; UTPRO2; UTPRO2_sp1234r4"? Thank you

I added lines to outliers.py to check whether bin's id match the id in the "outliers" file, e.g., outliers.tsv, taxon_filter.tsv and ssu_erroneous.tsv. it will solve the uncorrectly removing of contigs...

Hi, I have notice you have separate eukaryote and prokaryote, do you have plans on splitting prokaryote into bacteria and archaea? Thanks, Jie