LI Fan

target_cluster, x/y_pixel and nbr_domians in Identify SVGs section

2

Hi Dr. Hu, Sorry for new questions. I am running SpaGCN for identifying SVGs using my spatial data. There are some troubles stopped me to get through this section. 1....

Dear Dr. Hu, I ran my data with SpaGCN and found this software is good for Spatial transcriptomic data generated by one chip. On the other hand, the results from...

plotHeatmap function can only show cell ids instead of patient ids (group names)

1

Dear all, Does anyone know how these codes in the demo (https://github.com/akdess/CaSpER/blob/master/demo/sCellGBM.R) show the patient ids (not cell ids) as it shows in Nature communication paper (https://www.nature.com/articles/s41467-019-13779-x#MOESM1)？ ``` In the...